histone_h3k4me1

h3k4me1


A toy dataset of H3k4me1 peaks from liver ChIP-seq through the encode project.  
The file is a 
BED file.


datasets

This package builds on the Epimods framework which
facilitates finding weighted subnetworks ("modules") on
Illumina Infinium 27k arrays using the SpinGlass algorithm, as
implemented in the iGraph package. We have created a class of
gene centric annotations associated with p-values and effect
sizes and scores from any researchers prior statistical results
to find functional modules.

Neil Ari Wijetunga

SMITE

Significance-based Modules Integrating the Transcriptome and
Epigenome

histone_h3k4me1 function

A data frame with 75448 observations on the following 3 variables.
  <dl>
    <dt>column1</dt><dd>a character vector specifying chromsome</dd> <dt>column2</dt><dd>an integer vector specifying start</dd> <dt>column3</dt><dd>an integer vector specifying end</dd> </dl> 

Format

GSM669972, GSM621654, GSM537706 Roadmap Epigenomics
Lister R, et al. Nature. 2009 Nov 19;462(7271):315-22
ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the 
human genome. Nature. 2012 Sep 6;489(7414):57-74. 

Source

A toy dataset of H3k4me1 peaks from liver ChIP-seq through the encode project.  
The file is a 
BED file.

histone_h3k4me1: A toy dataset of H3k4me1 peaks to test within SMITE

Description

Usage

Arguments

Value

Format

Source

Details

Examples