plotDensityPval

plotDensityPval,PvalueAnnotation-method


An S4 object of class PvalueAnnotation.


pvalue_annotation


A character specifying the name of the reference category. DEFAULT is 
"expression_pvalue"



This function in called by the normalizePval function, but can also be called
by the user to visualize the relative densities of combined p-values (scores). 


 density 

 SMITE 

This package builds on the Epimods framework which
facilitates finding weighted subnetworks ("modules") on
Illumina Infinium 27k arrays using the SpinGlass algorithm, as
implemented in the iGraph package. We have created a class of
gene centric annotations associated with p-values and effect
sizes and scores from any researchers prior statistical results
to find functional modules.

Neil Ari Wijetunga

SMITE

Significance-based Modules Integrating the Transcriptome and
Epigenome

plotDensityPval function

A character specifying the name of the reference category. DEFAULT is 
"expression_pvalue"

This function in called by the normalizePval function, but can also be called
by the user to visualize the relative densities of combined p-values (scores).

plotDensityPval: Plot the density of the combined scores stored in a PvalueObject

Description

Usage

Arguments

Value

Examples