test_annotation_score_data

test_annotation


 This Pvalue annotation has only scoring data filled in to use in late
pipeline "SMITE" functions.  It can be used to skip the loading data phase
of analysis and test latter functionality.


datasets

This package builds on the Epimods framework which
facilitates finding weighted subnetworks ("modules") on
Illumina Infinium 27k arrays using the SpinGlass algorithm, as
implemented in the iGraph package. We have created a class of
gene centric annotations associated with p-values and effect
sizes and scores from any researchers prior statistical results
to find functional modules.

Neil Ari Wijetunga

SMITE

Significance-based Modules Integrating the Transcriptome and
Epigenome

test_annotation_score_data function

A PvalueAnnotation with the following slots
  <dl>
    <dt>score_data</dt><dd>a PvalueObject with slots corresponding to pval_data,
    effect_data, genes, signs_index, scores, trans, scoring_vector, and 
    module_otuput</dd> </dl> 

Format

This Pvalue annotation has only scoring data filled in to use in late
pipeline "SMITE" functions.  It can be used to skip the loading data phase
of analysis and test latter functionality.

test_annotation_score_data: A toy PvalueAnnotation

Description

Usage

Arguments

Value

Format

Details

Examples