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SNPchip (version 2.18.0)
Visualizations for copy number alterations
Description
This package defines methods for visualizing high-throughput genomic data
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Version
Version
2.18.0
2.16.0
2.14.0
2.12.0
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Version
2.18.0
License
LGPL (>= 2)
Maintainer
Robert Scharpf
Last Published
January 1st, 1970
Functions in SNPchip (2.18.0)
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Deprecated
SNPchip Deprecated
plotIdiogram
Plots idiogram for one chromosome
xyplot
Plot copy number and physical position for a set of genomic intervals.
dataFrame-methods
Construct a data.frame from genomic data for plotting
getCytoband
getCytoband
latticeFigs
Generate trellis objects of log R ratios and B allele frequencies
xypanel
A panel function for plotting copy number versus physical position
arrangeFigs
Arranging two trellis objects on a grid.
xyplotLrrBaf
xyplot lattice function for RangedData and oligoSnpSet objects
dataFrame
Generic function for coercing gSet objects to data.frame
arrangeSideBySide
Helper function to arrange two trellis objects side by side on a grid.
xypanelBaf
Panel function for plotting copy number and B allele frequencies for a genomic interval.
centromere
Coordinates of centromere