dataFrame-methods: Construct a data.frame from genomic data for plotting
Description
Construct a data.frame of genomic data (log R ratios and BAFs)
from a RangedSummarizedExperiment with markers in the interval given
by the GRanges object.
Methods
signature(range = "GRanges", data = "gSet")- The argument
range is often intervals from a hidden Markov model fit to the
genomic data in the data object. gSet-derived classes
contain assay data on copy number and allele frequencies.
signature(range = "GRanges", data =
"RangedSummarizedExperiment")- The argument
range is often
intervals from a hidden Markov model fit to the genomic data in the
data object. The RangedSummarizedExperiment is assumed to
contain log R ratio (lrr) and B allele frequency (baf) assays.