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SNPchip (version 2.18.0)

Visualizations for copy number alterations

Description

This package defines methods for visualizing high-throughput genomic data

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Version

Version

2.18.0

License

LGPL (>= 2)

Maintainer

Robert Scharpf

Last Published

February 15th, 2017

Functions in SNPchip (2.18.0)

Deprecated

SNPchip Deprecated
plotIdiogram

Plots idiogram for one chromosome
xyplot

Plot copy number and physical position for a set of genomic intervals.
dataFrame-methods

Construct a data.frame from genomic data for plotting
getCytoband

getCytoband
latticeFigs

Generate trellis objects of log R ratios and B allele frequencies
xypanel

A panel function for plotting copy number versus physical position
arrangeFigs

Arranging two trellis objects on a grid.
xyplotLrrBaf

xyplot lattice function for RangedData and oligoSnpSet objects
dataFrame

Generic function for coercing gSet objects to data.frame
arrangeSideBySide

Helper function to arrange two trellis objects side by side on a grid.
xypanelBaf

Panel function for plotting copy number and B allele frequencies for a genomic interval.
centromere

Coordinates of centromere