combinedamgut

<p>A pre-processed OTU table and clinical data were obtained from the American
 Gut Project, available in the SpiecEasi R package.</p>

data

example

SOHPIE

package.

'SOHPIE' (pronounced as SOFIE) is a novel pseudo-value regression approach for differential co-abundance network analysis of microbiome data, which can include additional clinical covariate in the model. The full methodological details can be found in Ahn S and Datta S (2023) <arXiv:2303.13702v1>.

Seungjun Ahn

Statistical Approach via Pseudo-Value Information and Estimation

Somnath Datta

combinedamgut function

Format

A Subdata from the American Gut Project study data — combinedamgut

A Subdata from the American Gut Project study data

combinedamgut: A Subdata from the American Gut Project study data

Description

Usage

Arguments

Format

References

Examples