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SOHPIE (version 1.0.5)

Statistical Approach via Pseudo-Value Information and Estimation

Description

'SOHPIE' (pronounced as SOFIE) is a novel pseudo-value regression approach for differential co-abundance network analysis of microbiome data, which can include additional clinical covariate in the model. The full methodological details can be found in Ahn S and Datta S (2023) .

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Version

Install

install.packages('SOHPIE')

Monthly Downloads

583

Version

1.0.5

License

GPL-3

Maintainer

Seungjun Ahn

Last Published

July 4th, 2023

Functions in SOHPIE (1.0.5)

qval_specific_var

qval_specific_var
sparcc

sparcc wrapper
thetatildefun

thetatildefun
coeff_specific_var

coeff_specific_var
combineddietswap

A Subdata from the Diet Swap study data
asso_mat

asso_mat
DCtaxa_tab

DCtaxa_tab
pseudoreg.summary

pseudoreg.summary()
SOHPIE_DNA

SOHPIE_DNA
thetahats

thetahats
qval

qval
combinedamgut

A Subdata from the American Gut Project study data
pseudoreg

pseudoreg
coeff

coeff