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SPIAssay (version 1.1.0)

A Genetic-Based Assay for the Identification of Cell Lines

Description

The SNP Panel Identification Assay (SPIA) is a package that enables an accurate determination of cell line identity from the genotype of single nucleotide polymorphisms (SNPs). The SPIA test allows to discern when two cell lines are close enough to be called similar and when they are not. Details about the method are available at "Demichelis et al. (2008) SNP panel identification assay (SPIA): a genetic-based assay for the identification of cell lines. Nucleic Acids Res., 3, 2446-2456".

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Version

Install

install.packages('SPIAssay')

Monthly Downloads

15

Version

1.1.0

License

GPL (>= 2)

Maintainer

Davide Prandi

Last Published

August 19th, 2016

Functions in SPIAssay (1.1.0)

SPIATest

Function to compute SPIA test
ComputingSPIADistance

Function ComputingSPIADistance computes SPIA distance bewteen two SNPs vectors
getSPIALimits

Function getSPIALimits computes the limits for the SPIA test
SPIAssay

A genetic-based assay for the identification of cell lines
SPIAPlot

Function to visualize the result of the SPIA test
toSPIAData

Function to code SNPs data into SPIA format