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STATegRa (version 1.0.0)

Classes and methods for multi-omics data integration

Description

Classes and tools for multi-omics data integration.

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Version

Version

1.0.0

License

GPL-2

Maintainer

David GomezCabrero

Last Published

February 15th, 2017

Functions in STATegRa (1.0.0)

bioDist

bioDist
bioDistclass

bioDistclass
bioDistW

bioDistW
bioDistFeaturePlot

bioDistFeaturePlot
bioMap-class

bioMap class
bioDistFeature

bioDistFeature
bioDistWPlot

bioDistWPlot
bioMap-constructor

bioMap constructor
bioDistclass-class

bioDistclass
biplotRes

Biplot results of Components Analysis
modelSelection

Number of optimal common and distinctive components in object-wise data
getMethodInfo

Retrieve information about the components analysis done using omicsCompAnalysis from an caClass-class
omicsCompAnalysis

Components analysis for the analysis of object wise data
createOmicsExpressionSet

Create an ExpressionSet object since omics dataset.
caClass-class

caClass
getInitialData

Retrieve Initial data from caClass objects
STATegRa

STATegRa
STATegRa_initial_data

STATegRa_initial_data
PCA.selection

Selection of optimal number of components using PCA
getLoadings

Retrieve information about the loadings obtained using omicsCompAnalysis from an caClass-class
plotRes

Plot results of Components Analysis
getScores

Retrieve information about the scores obtained using omicsCompAnalysis from an caClass-class
getPreprocessing

Retrieve information about the preprocessing done in omicsCompAnalysis from an caClass-class
plotVAF

Function to plot the VAF (Variance Explained For) obtained from Component Analysis.
getVAF

Retrieve information about the VAF obtained using omicsCompAnalysis from an caClass-class
selectCommonComps

Select common components of two blocks of object wise omics data.
STATegRaUsersGuide

View STATegRa User's Guide