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STATegRa (version 1.6.2)

Classes and methods for multi-omics data integration

Description

Classes and tools for multi-omics data integration.

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Version

Version

1.6.2

License

GPL-2

Maintainer

David GomezCabrero

Last Published

February 15th, 2017

Functions in STATegRa (1.6.2)

STATegRa_data

STATegRa data
getPreprocessing

Retrieve information about preprocessing
STATegRa

STATegRa
getVAF

Retrieve information abotut VAF
createOmicsExpressionSet

createOmicsExpressionSet
getMethodInfo

Retrieve information about component analysis method
holistOmics

HolistOmics an application of NPC on omics datasets
bioDistFeaturePlot

bioDistFeaturePlot
bioMap

bioMap
modelSelection

Find optimal common and distinctive components
selectCommonComps

Select common components in two data blocks
plotRes

Plot component analysis results
PCA.selection

Select an optimal number of components using PCA
biplotRes

Biplot of component analysis
bioDistW

bioDistW
bioDistFeature

bioDistFeature
omicsCompAnalysis

Components analysis for multiple objects
bioDistWPlot

bioDistWPlot
STATegRaUsersGuide

STATegRaUsersGuide
caClass-class

caClass
plotVAF

Plot VAF (Variance Explained For) from Component Analysis
bioDistclass

bioDistclass
STATegRa_data_TCGA_BRCA

STATegRa data
bioDist

bioDist
getLoadings

Retrieve component analysis loadings
getInitialData

Retrieve initial data from caClass objects
getScores

Retrieve component analysis scores