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STATegRa (version 1.6.2)
Classes and methods for multi-omics data integration
Description
Classes and tools for multi-omics data integration.
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Version
Version
1.6.2
1.4.0
1.2.1
1.0.0
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Version
1.6.2
License
GPL-2
Maintainer
David GomezCabrero
Last Published
September 9th, 2014
Functions in STATegRa (1.6.2)
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STATegRa_data
STATegRa data
getPreprocessing
Retrieve information about preprocessing
STATegRa
STATegRa
getVAF
Retrieve information abotut VAF
createOmicsExpressionSet
createOmicsExpressionSet
getMethodInfo
Retrieve information about component analysis method
holistOmics
HolistOmics an application of NPC on omics datasets
bioDistFeaturePlot
bioDistFeaturePlot
bioMap
bioMap
modelSelection
Find optimal common and distinctive components
selectCommonComps
Select common components in two data blocks
plotRes
Plot component analysis results
PCA.selection
Select an optimal number of components using PCA
biplotRes
Biplot of component analysis
bioDistW
bioDistW
bioDistFeature
bioDistFeature
omicsCompAnalysis
Components analysis for multiple objects
bioDistWPlot
bioDistWPlot
STATegRaUsersGuide
STATegRaUsersGuide
caClass-class
caClass
plotVAF
Plot VAF (Variance Explained For) from Component Analysis
bioDistclass
bioDistclass
STATegRa_data_TCGA_BRCA
STATegRa data
bioDist
bioDist
getLoadings
Retrieve component analysis loadings
getInitialData
Retrieve initial data from caClass objects
getScores
Retrieve component analysis scores