STRINGdb (version 1.10.0)

get_homologs_besthits: get_homologs_besthits

Description

Returns the best blast hits x species of the given input identifiers.

Usage

"get_homologs_besthits"(string_ids, symbets = FALSE, target_species_id = NULL, bitscore_threshold=NULL)

Arguments

string_ids

a vector of STRING identifiers.

target_species_id

NCBI taxonomy identifier of the species to query for homologs (the species must be present in the STRING database)

bitscore_threshold

threshold on the bitscore of the blast alignment.

symbets

specify whether you want only symmetrical best hits

Value

Data frame containing the best blast hits x species of the given input identifiers.