Learn R Programming
⚠️There's a newer version (1.12.0) of this package.Take me there.

STRINGdb (version 1.10.0)

STRINGdb (Search Tool for the Retrieval of Interacting proteins database)

Description

The STRINGdb package provides a user-friendly interface to the STRING protein-protein interactions database ( http://www.string-db.org ).

Copy Link

Version

Version

1.10.0

License

GPL-2

Maintainer

Andrea Franceschini Roger Meier rogermeierlmscethzch Christian von Mering meringimlsuzhch

Last Published

February 15th, 2017

Functions in STRINGdb (1.10.0)

diff_exp_example1

example of microarray data (data processed from GEO GSE9008)
benchmark_ppi

benchmark_ppi
coeffOfvar

coeffOfvar
downloadAbsentFile

downloadAbsentFile
delColDf

delColDf
add_diff_exp_color

add_diff_exp_color
get_aliases

get_aliases
add_proteins_description

add_proteins_description
downloadAbsentFileSTRING

downloadAbsentFileSTRING
benchmark_ppi_pathway_view

benchmark_ppi_pathway_view
get_homologs_besthits

get_homologs_besthits
get_graph

get_graph
get_enrichment

get_enrichment
get_annotations_desc

get_annotations_desc
get_homologs

get_homologs
get_annotations

get_annotations
get_interactions

get_interactions
get_link

get_link
get_bioc_graph

get_bioc_graph
get_clusters

get_clusters
get_term_proteins

get_term_proteins
get_pubmed_interaction

get_pubmed_interaction
get_proteins

get_proteins
get_neighbors

get_neighbors
interactions_example

example of a protein-protein interactions sorted data frame
get_png

get_png
multi_map_df

multi_map_df
plot_network

plot_network
renameColDf

renameColDf
set_background

set_background
get_ppi_enrichment_full

get_ppi_enrichment_full
plot_ppi_enrichment

plot_ppi_enrichment
plot_ppi_enrichment_graph

plot_ppi_enrichment_graph
get_ppi_enrichment

get_ppi_enrichment
ppie.getNumEdgesBetween

ppie.getNumEdgesBetween
remove_homologous_interactions

remove_homologous_interactions
get_pubmed

get_pubmed
get_STRING_species

get_STRING_species
ppi_enrichment

ppi_enrichment
ppie.compLambda

ppie.compLambda
STRINGdb-class

Class "STRINGdb"
get_summary

get_summary
STRINGdb-package

STRINGdb (an R interface to http://string-db.org)
map

map
get_subnetwork

get_subnetwork
post_payload

post_payload
mp

mp
ppi_enrichment_full

ppi_enrichment_full
STRINGdb

STRINGdb (an R interface to http://string-db.org)
load_all

load_all
ppie.compPij

ppie.compPij
load

load
ppie.compLambdaL1L2

ppie.compLambdaL1L2