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#SemDist

R bioconductor package for computing semantic distance statistic for protein function predictors.

##File list/functions:

###computeIA.R : This file contains the computeIA function, which creates a file containing all of the information accretion data for the input (organism, ontology). Both inputs are strings.

###findRuMi.R : This file contains the computeMI and computeRU functions, which calculate the remaining uncertainty and misinformation for given sets of true and predicted terms in a specified ontology.

###gene2GO.R : Contains additional helper functions to load GO data.

###utilities.R : Contains helper functions to initialize package environemnts.

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Version

Version

1.2.0

License

GPL (>= 2)

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Maintainer

Ian Gonzalez

Last Published

February 15th, 2017

Functions in SemDist (1.2.0)

RUMIcurve

Information accretion based predictor assessment (across many thresholds)
computeIA

Compute information accretion for an ontology
termcnt

Term Count Data
findRUMI

Information accretion based predictor assessment
parentcnt

Parent Count Data
IAccr

Information Accretion Data