IAccr


This data set contains the information accretion values for each term in the requested ontology/species.


datasets

This package implements methods to calculate information
accretion for a given version of the gene ontology and uses this
data to calculate remaining uncertainty, misinformation, and
semantic similarity for given sets of predicted annotations and
true annotations from a protein function predictor.

Ian Gonzalez

SemDist

Information Accretion-based Function Predictor Evaluation

IAccr function

A named numeric vector with one value corresponding to each GO accession in the ontology.

Format

The gene ontology data was obtained from the GO.db package and the annotation data was obtained from the following packages for each organism: anopheles   = org.Ag.eg.db arabidopsis = org.At.tair.db bovine      = org.Bt.eg.db canine      = org.Cf.eg.db chicken     = org.Gg.eg.db chimp       = org.Pt.eg.db ecolik12    = org.EcK12.eg.db fly         = org.Dm.eg.db human       = org.Hs.eg.db malaria     = org.Pf.plasmo.db mouse       = org.Mm.eg.db pig         = org.Ss.eg.db rat         = org.Rn.eg.db rhesus      = org.Mmu.eg.db worm        = org.Ce.eg.db xenopus     = org.Xl.eg.db yeast       = org.Sc.sgd.db zebrafish   = org.Dr.eg.db

IAccr: Information Accretion Data

Description

Usage

Arguments

Format

Source

Examples