SeqFeatR (version 0.3.3)

q-values: Calculate q-values from p-values

Description

Calculates and adds a column of q-values to a list of given p-values.

Usage

qvalues(path_to_file_csv = NULL, save_name_csv)

Arguments

path_to_file_csv

file with a column with p-values. Has to contain a column called "p_value" (without the double quotes). For reference see example file.

save_name_csv

name of file to which results are saved in csv format.

Author

Bettina Budeus

Details

Takes a csv file with a column which is called 'p_values' and uses the qvalues package to calculate from this column the corresponding q-values.

Examples

#Input file
if (FALSE) {
file_input <- system.file("extdata", "assocpair_results.csv", package="SeqFeatR")

#Usage
qvalues(
	path_to_file_csv=file_input, 
	save_name_csv="q-values_result.csv")
}