SetRank (version 1.1.0)

createCytoscapeVizMap: Create a Cytoscape visual style for one or more SetRank networks.

Description

Generates a VizMap XML file that can be imported, together with the network in Cytoscape, a tool for network analysis and visualization (urlhttp://www.cytoscape.org).

Usage

createCytoscapeVizMap(network = NULL, networkList = NULL, outputFile = "setrank.xml")

Arguments

network

A single network to generate a style for.

networkList

A list of networks to generate a single style for.

outputFile

The path for the ouputfile.

Value

None. The function writes out a Cytoscape VizMap XML file as a side effect.

Details

You must either pass a single network, through the network argument, or a list of networks, through the networkList argument, to the function. When using the latter option, the function will generate a single style applicable to all networks. This style allows to easily spot differences between different networks generated from the same dataset.

Specifying both arguments will results in an error. Networks should of course be generated by setRankAnalysis function.