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SetRank (version 1.1.0)

Advanced Gene Set Enrichment Analysis

Description

Implements an algorithm to conduct advanced gene set enrichment analysis on the results of genomics experiments.

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Version

Install

install.packages('SetRank')

Monthly Downloads

26

Version

1.1.0

License

GPL-3

Maintainer

Cedric Simillion

Last Published

May 11th, 2016

Functions in SetRank (1.1.0)

exportSingleResult

Export a SetRank network and accompanying tables.
createIDConverter

Create a function to convert gene or protein IDs
exportMultipleResults

Export multiple SetRank networks and accompanying tables.
fixGraphML

Fix the igraph graphML export
exportGeneNets

Create gene interaction networks for all significant gene sets.
generatePMapping

Generates a visual property mapping for p-value attributes
propertyFunctions

Attribute handlers for generating the VizMap XML
cytoscapeExport

Prepare networks for visualization in Cytoscape
createPathwayTable

Creates a table of all significant pathways in different conditions.
styleXML

VizMap XML template
buildSetCollection

Create a gene set collection
createCytoscapeVizMap

Create a Cytoscape visual style for one or more SetRank networks.
generateContinuousMapping

Generates a continuous VizMap property mapping.
membershipTable

Create a gene set membership table.
setRankAnalysis

Advanced gene set enrichment analysis.