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SetRank (version 1.1.0)
Advanced Gene Set Enrichment Analysis
Description
Implements an algorithm to conduct advanced gene set enrichment analysis on the results of genomics experiments.
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Version
1.1.0
1.0.1
1.0.0
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Install
install.packages('SetRank')
Monthly Downloads
34
Version
1.1.0
License
GPL-3
Maintainer
Cedric Simillion
Last Published
May 11th, 2016
Functions in SetRank (1.1.0)
Search functions
exportSingleResult
Export a SetRank network and accompanying tables.
createIDConverter
Create a function to convert gene or protein IDs
exportMultipleResults
Export multiple SetRank networks and accompanying tables.
fixGraphML
Fix the igraph graphML export
exportGeneNets
Create gene interaction networks for all significant gene sets.
generatePMapping
Generates a visual property mapping for p-value attributes
propertyFunctions
Attribute handlers for generating the VizMap XML
cytoscapeExport
Prepare networks for visualization in Cytoscape
createPathwayTable
Creates a table of all significant pathways in different conditions.
styleXML
VizMap XML template
buildSetCollection
Create a gene set collection
createCytoscapeVizMap
Create a Cytoscape visual style for one or more SetRank networks.
generateContinuousMapping
Generates a continuous VizMap property mapping.
membershipTable
Create a gene set membership table.
setRankAnalysis
Advanced gene set enrichment analysis.