cytoscapeExport: Prepare networks for visualization in Cytoscape
Description
Exports a list of networks in GraphML format and creates a Cytoscape a
VizMap XML file with a visualisation style applicable to all networks.
Usage
cytoscapeExport(networkList, outputDir)
Arguments
networkList
A named list of networks generated by the
setRankAnalysis function.
outputDir
The path where the files should be written to. The
last element in the path will be created when it doesn't exist.
Value
None. The function writes out files as a side effect.
Details
Each network will be written to a separate file in the specified output
directory. The names of the supplied list of networks will be used as
filenames with the .net.xml extension added. The VizMap file will be
called setrank.xml and will also be written to the output directory.