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SetRank (version 1.1.0)

membershipTable: Create a gene set membership table.

Description

Creates a table showing which significant genes belong to which significant gene sets. This table allows to investigate the results of a SetRank analysis in more detail.

Usage

membershipTable(selectedGenes, collection, network)

Arguments

selectedGenes
The set of significant genes used during the SetRank analysis.
collection
The setCollection used during the SetRank analysis.
network
A network generated by the setRankAnalysis function.

References

A matrix of boolean values. The rownames are the geneIDs, the column names are the gene set IDs. A TRUE value in a cell indicates that the gene of the row is present in the gene set of the column; FALSE means otherwise.