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SiMRiv (version 1.0.7)

Simulating Multistate Movements in River/Heterogeneous Landscapes

Description

Provides functions to generate and analyze spatially-explicit individual-based multistate movements in rivers, heterogeneous and homogeneous spaces. This is done by incorporating landscape bias on local behaviour, based on resistance rasters. Although originally conceived and designed to simulate trajectories of species constrained to linear habitats/dendritic ecological networks (e.g. river networks), the simulation algorithm is built to be highly flexible and can be applied to any (aquatic, semi-aquatic or terrestrial) organism, independently on the landscape in which it moves. Thus, the user will be able to use the package to simulate movements either in homogeneous landscapes, heterogeneous landscapes (e.g. semi-aquatic animal moving mainly along rivers but also using the matrix), or even in highly contrasted landscapes (e.g. fish in a river network). The algorithm and its input parameters are the same for all cases, so that results are comparable. Simulated trajectories can then be used as mechanistic null models (Potts & Lewis 2014, ) to test a variety of 'Movement Ecology' hypotheses (Nathan et al. 2008, ), including landscape effects (e.g. resources, infrastructures) on animal movement and species site fidelity, or for predictive purposes (e.g. road mortality risk, dispersal/connectivity). The package should be relevant to explore a broad spectrum of ecological phenomena, such as those at the interface of animal behaviour, management, landscape and movement ecology, disease and invasive species spread, and population dynamics.

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Install

install.packages('SiMRiv')

Monthly Downloads

304

Version

1.0.7

License

GPL (>= 2)

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Maintainer

Miguel Porto

Last Published

September 10th, 2024

Functions in SiMRiv (1.0.7)

adjustModel

Finds ("estimates") simulation input parameters able to replicate a given (real) trajectory, assuming the given species model
resistanceFromShape

Build resistance raster by combining shapefiles
generationPlot

Plots input parameter optimization results
perceptualRange

Define a perceptual range
binCounts

Count values in given bins
Arith-methods

Shortcuts for defining species movement states
transitionMatrix

Define a state transition matrix
species

Create a species
sampleMovement

Resample a simulated movement and compute step-wise statistics
speciesModel

Defines a species model to adjust to a real trajectory
SiMRiv-package

tools:::Rd_package_title("SiMRiv")
simulate

Simulate movements in river networks, homogeneous, or heterogeneous landscapes
state

Define a movement state