precomputed

bound.cutoff

compR

increasedR

 
  The SGR datset consists of three data sets stored in an ExpressionSet object.
  These are SoxNDam, SoxN-DDam and DDam with probes located on chromosome X 
  between 1-6000000 bp. The precomputed dataset contains precomputed objects 
  for the bound.cutoff, compR and increasedR to save time for building the vignette.  


datasets

SimBindProfiles identifies common and unique binding regions in genome tiling array data.
This package does not rely on peak calling, but directly compares binding profiles
processed on the same array platform. It implements a simple threshold approach,
thus allowing retrieval of commonly and differentially bound regions between
datasets as well as events of compensation and increased binding.

Bettina Fischer

SimBindProfiles

Similar Binding Profiles

SGR function

An ExpressionSet object, with three data sets.

Format

The SGR datset consists of three data sets stored in an ExpressionSet object.
  These are SoxNDam, SoxN-DDam and DDam with probes located on chromosome X 
  between 1-6000000 bp. The precomputed dataset contains precomputed objects 
  for the bound.cutoff, compR and increasedR to save time for building the vignette.

SGR: A Sample Data object

Description

Usage

Arguments

Format

Examples