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SimBindProfiles (version 1.10.0)

Similar Binding Profiles

Description

SimBindProfiles identifies common and unique binding regions in genome tiling array data. This package does not rely on peak calling, but directly compares binding profiles processed on the same array platform. It implements a simple threshold approach, thus allowing retrieval of commonly and differentially bound regions between datasets as well as events of compensation and increased binding.

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Version

Version

1.10.0

License

GPL-3

Maintainer

Bettina Fischer

Last Published

February 15th, 2017

Functions in SimBindProfiles (1.10.0)

increasedBindingRegions

Classify two Binding Profiles - Increased Binding
pairwiseRegions

Classify two Binding Profiles
probeLengthPlot

Plot the probe length frequency
compensationRegions

Classify two Binding Profiles - Compensation
threewayRegions

Classify three Binding Profiles
eSetScatterPlot

Scatterplot of ExpressionSet object
plotBoundProbes

Plot coloured bound probes
probeAnnoFromESet

Build a probeAnno from ExpressionSet
findBoundCutoff

Find the bound.cutoff
readSgrFiles

Read sgr data
SGR

A Sample Data object
SimBindProfiles-package

Similar Binding Profiles, identifies common and unique regions in array genome tiling array data