SimBindProfiles (version 1.10.0)

probeLengthPlot: Plot the probe length frequency

Description

Plot the probe length frequency.

Usage

probeLengthPlot(xSet, sgrset = 1, chr = NULL, bound.cutoff, probe.max.spacing = 200, xlim.max = 25)

Arguments

xSet

object of class ExpressionSet

sgrset

integer; specifying which data set to use from the ExpressionSet

chr

probes from which chromosome to be used, default NULL means all probes

bound.cutoff

numeric; threshold above probes are considered “bound”

probe.max.spacing

integer; maximum amount of base pairs at which bound probes are condensed into one region.

xlim.max

integer; maximum number of probes plotted along the x-axsis

Value

Details

Plot the probe length frequency per regions based on a bound.cutoff value.

See Also

plot

Examples

  dataPath <- system.file("data",package="SimBindProfiles")
  load(file.path(dataPath,"SGR.RData"))
  probeLengthPlot(SGR, sgrset=1, chr=NULL, bound.cutoff=1.2, probe.max.spacing=200, xlim.max=50)