Learn R Programming
⚠️There's a newer version (0.90.96) of this package.Take me there.

StatCharrms (version 0.90.92)

Statistical Analysis of Chemistry, Histopathology, and Reproduction Endpoints Including Repeated Measures and Multi-Generation Studies

Description

A front end for the statistical analyses involved in the tier II endocrine disruptor screening program. The analyses available to this package are: Rao-Scott adjusted Cochran-Armitage test for trend By Slices (RSCABS), a Standard Cochran-Armitage test for trend By Slices (SCABS), mixed effects Cox proportional model, Jonckheere-Terpstra step down trend test Dunn test, one way ANOVA, weighted ANOVA, mixed effects ANOVA, repeated measures ANOVA, and Dunnett test.

Copy Link

Version

Install

install.packages('StatCharrms')

Monthly Downloads

121

Version

0.90.92

License

CC0

Maintainer

Joe Swintek

Last Published

February 11th, 2019

Functions in StatCharrms (0.90.92)

cleanString

Cleans a string of illegal characters
autoStdAnylsis

Run statistical tests according to OECD guidelines
ShowChangeLog

Display the change logs for StatCharms
getLineContrast

Generate contrasts
StatCharrms-package

StatCharrms
analyseTime2Effect

Mixed effect time to event analysis
jonckheereTerpstraTest

Perform the Jonckheere-Terpstra trend test
fecundityData

Example fecundity data
oneWayDunnettTest

One way Dunnett's test.
monotonicityTest

A test for a monotonic trend
forceStdAnalysis

Run a chosen analysis
runMultiGen

Runs a mixed effects ANOVA
tranformTime

Transforms the time variable
FindFormat

Find the format the date is written in
ReadMeFile

Calls the read me file
lengthWeightData

Example length and weight data
leveneTestSC

Levene test for homogeneity of variance
rankTransform

Rank transforms a response
responseTransform

Transforms a response
addSpec.te

Add the specification widgets for time to event analysis
addMultiSpec.std

Add a data specification tab
dunnsTest

Perform a Dunns test
StdEndMain

GUI for Analysis of numerical endpoints
eventTimeData

Time to event data
generateExamples

Generate examples
getFileName

Gets a file name
Time2EventMain

GUI for time to event analysis
buildResultsWindow.te

Display the results from time to event analyses
checkTime

Checks the format the date is in
medianData

Calculate the data median
makeSummaryTable

Generate a summary table of a data set.
williamsTestLookUpTable

Look up table for the critical values used in the Williams test.
williamsTest

Performs Williams Test
Reference

Display the references for StatCharrms
Run.StatCharrms

Main function call for StatCharrms
date2Numeric

Convert a date into a number
basicAnova

Perform a standard one way ANOVA.
buildResultsWindow

Build the results window for the analysis of numerical endpoints
transformationWarning

Gives warnings about a transformation
wilksTest

Performs the Shapiro-Wilks test.