StatCharrms v0.90.92
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Statistical Analysis of Chemistry, Histopathology, and Reproduction Endpoints Including Repeated Measures and Multi-Generation Studies
A front end for the statistical analyses involved in the tier II endocrine
disruptor screening program. The analyses available to this package are:
Rao-Scott adjusted Cochran-Armitage test for trend By Slices (RSCABS),
a Standard Cochran-Armitage test for trend By Slices (SCABS),
mixed effects Cox proportional model, Jonckheere-Terpstra step down trend test
Dunn test, one way ANOVA, weighted ANOVA, mixed effects ANOVA, repeated
measures ANOVA, and Dunnett test.
Functions in StatCharrms
| Name | Description | |
| cleanString | Cleans a string of illegal characters | |
| autoStdAnylsis | Run statistical tests according to OECD guidelines | |
| ShowChangeLog | Display the change logs for StatCharms | |
| getLineContrast | Generate contrasts | |
| StatCharrms-package | StatCharrms | |
| analyseTime2Effect | Mixed effect time to event analysis | |
| jonckheereTerpstraTest | Perform the Jonckheere-Terpstra trend test | |
| fecundityData | Example fecundity data | |
| oneWayDunnettTest | One way Dunnett's test. | |
| monotonicityTest | A test for a monotonic trend | |
| forceStdAnalysis | Run a chosen analysis | |
| runMultiGen | Runs a mixed effects ANOVA | |
| tranformTime | Transforms the time variable | |
| FindFormat | Find the format the date is written in | |
| ReadMeFile | Calls the read me file | |
| lengthWeightData | Example length and weight data | |
| leveneTestSC | Levene test for homogeneity of variance | |
| rankTransform | Rank transforms a response | |
| responseTransform | Transforms a response | |
| addSpec.te | Add the specification widgets for time to event analysis | |
| addMultiSpec.std | Add a data specification tab | |
| dunnsTest | Perform a Dunns test | |
| StdEndMain | GUI for Analysis of numerical endpoints | |
| eventTimeData | Time to event data | |
| generateExamples | Generate examples | |
| getFileName | Gets a file name | |
| Time2EventMain | GUI for time to event analysis | |
| buildResultsWindow.te | Display the results from time to event analyses | |
| checkTime | Checks the format the date is in | |
| medianData | Calculate the data median | |
| makeSummaryTable | Generate a summary table of a data set. | |
| williamsTestLookUpTable | Look up table for the critical values used in the Williams test. | |
| williamsTest | Performs Williams Test | |
| Reference | Display the references for StatCharrms | |
| Run.StatCharrms | Main function call for StatCharrms | |
| date2Numeric | Convert a date into a number | |
| basicAnova | Perform a standard one way ANOVA. | |
| buildResultsWindow | Build the results window for the analysis of numerical endpoints | |
| transformationWarning | Gives warnings about a transformation | |
| wilksTest | Performs the Shapiro-Wilks test. | |
| No Results! | ||
Vignettes of StatCharrms
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Details
| Date | 2019-2-11 |
| SystemRequirements | GTK+ (>= 2.8.0) |
| ByteCompile | no |
| LazyLoad | yes |
| LazyData | yes |
| License | CC0 |
| URL | https://CRAN.R-project.org/package=StatCharrms |
| RoxygenNote | 6.0.1 |
| NeedsCompilation | no |
| Packaged | 2019-02-11 15:39:11 UTC; jswintek |
| Repository | CRAN |
| Date/Publication | 2019-02-11 16:33:15 UTC |
| imports | cairoDevice , car , clinfun , coxme , gWidgets , gWidgetsRGtk2 , lattice , methods , multcomp , nlme , R2HTML , RGtk2 , RSCABS , survival |
| depends | R (>= 3.1.0) |
| Contributors | Kevin Flynn, Jon Haselman, Maki Sakurai |
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