StatCharrms v0.90.92

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Statistical Analysis of Chemistry, Histopathology, and Reproduction Endpoints Including Repeated Measures and Multi-Generation Studies

A front end for the statistical analyses involved in the tier II endocrine disruptor screening program. The analyses available to this package are: Rao-Scott adjusted Cochran-Armitage test for trend By Slices (RSCABS), a Standard Cochran-Armitage test for trend By Slices (SCABS), mixed effects Cox proportional model, Jonckheere-Terpstra step down trend test Dunn test, one way ANOVA, weighted ANOVA, mixed effects ANOVA, repeated measures ANOVA, and Dunnett test.

Functions in StatCharrms

Name Description
cleanString Cleans a string of illegal characters
autoStdAnylsis Run statistical tests according to OECD guidelines
ShowChangeLog Display the change logs for StatCharms
getLineContrast Generate contrasts
StatCharrms-package StatCharrms
analyseTime2Effect Mixed effect time to event analysis
jonckheereTerpstraTest Perform the Jonckheere-Terpstra trend test
fecundityData Example fecundity data
oneWayDunnettTest One way Dunnett's test.
monotonicityTest A test for a monotonic trend
forceStdAnalysis Run a chosen analysis
runMultiGen Runs a mixed effects ANOVA
tranformTime Transforms the time variable
FindFormat Find the format the date is written in
ReadMeFile Calls the read me file
lengthWeightData Example length and weight data
leveneTestSC Levene test for homogeneity of variance
rankTransform Rank transforms a response
responseTransform Transforms a response
addSpec.te Add the specification widgets for time to event analysis
addMultiSpec.std Add a data specification tab
dunnsTest Perform a Dunns test
StdEndMain GUI for Analysis of numerical endpoints
eventTimeData Time to event data
generateExamples Generate examples
getFileName Gets a file name
Time2EventMain GUI for time to event analysis
buildResultsWindow.te Display the results from time to event analyses
checkTime Checks the format the date is in
medianData Calculate the data median
makeSummaryTable Generate a summary table of a data set.
williamsTestLookUpTable Look up table for the critical values used in the Williams test.
williamsTest Performs Williams Test
Reference Display the references for StatCharrms
Run.StatCharrms Main function call for StatCharrms
date2Numeric Convert a date into a number
basicAnova Perform a standard one way ANOVA.
buildResultsWindow Build the results window for the analysis of numerical endpoints
transformationWarning Gives warnings about a transformation
wilksTest Performs the Shapiro-Wilks test.
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Vignettes of StatCharrms

Name
Anova.png
DunnettNew.png
Dunns.png
FlowChart.png
IntroWindow.png
JTTest-New.png
Leven.png
MonoTest-New.png
RGtk2W.png
StandardAnl1.png
StandardAnl2-n.png
StandardAnl2.png
StandardAnl3-n.png
StandardAnl3.png
StandardAnl4.png
StandardAnl5-New.png
StandardAnl6-n.png
StandardAnl7-n.png
StandardAnl7.png
StatCharrms.Rnw
Time2Event1.png
Time2Event2.png
Time2Event3.png
Wilks.png
WillTest.png
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Details

Date 2019-2-11
SystemRequirements GTK+ (>= 2.8.0)
ByteCompile no
LazyLoad yes
LazyData yes
License CC0
URL https://CRAN.R-project.org/package=StatCharrms
RoxygenNote 6.0.1
NeedsCompilation no
Packaged 2019-02-11 15:39:11 UTC; jswintek
Repository CRAN
Date/Publication 2019-02-11 16:33:15 UTC

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