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SummarizedExperiment (version 1.0.0)

SummarizedExperiment container

Description

The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.

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Version

1.0.0

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in SummarizedExperiment (1.0.0)

intra-range-methods

Intra range transformations of a RangedSummarizedExperiment object

coverage-methods

Coverage of a RangedSummarizedExperiment object

nearest-methods

Finding the nearest range neighbor in RangedSummarizedExperiment objects

SummarizedExperiment0-class

SummarizedExperiment0 objects

findOverlaps-methods

Finding overlapping ranges in RangedSummarizedExperiment objects

Assays-class

Assays objects

makeSummarizedExperimentFromExpressionSet

Make a RangedSummarizedExperiment object from an ExpressionSet and vice-versa

RangedSummarizedExperiment-class

RangedSummarizedExperiment objects

inter-range-methods

Inter range transformations of a RangedSummarizedExperiment object

readKallisto

Input kallisto or kallisto bootstrap results.