TBEST (version 5.0)

partition: An object of class "partition"

Description

Description: This object is a list of four items, which jointly specify a detailed partition of a hierarchical tree into tight branches.

Arguments

Value

  • CallAn object of class Call, specifying the function call which generated the list.
  • bestAn object of class "best", see best for more info.
  • sigvalueA two-column matrix, with one row per each internal node of the tree. The first column enumerates the nodes. The second column profides the significance estimate for the tightness of the node.
  • partitionA two-column data frame specifying the partitition. The first column is a character vector with the names of the leaves. The second column provides the number of the part to which the leaf belongs.

See Also

PartitionTree,best,SigTree

Examples

data(leukemia)
mytable<-SigTree(data.matrix(leukemia),mystat="all",
       mymethod="ward",mymetric="euclidean",rand.fun="shuffle.column",
       distrib="Rparallel",njobs=2,Ptail=TRUE,tailmethod="ML")
class(mytable)
mypartition<-PartitionTree(x=mytable,siglevel=0.001,statname="fldc",
       sigtype="raw")
class(mypartition)
names(mypartition)