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TBEST (version 5.0)

Tree Branches Evaluated Statistically for Tightness

Description

Our method introduces mathematically well-defined measures for tightness of branches in a hierarchical tree. Statistical significance of the findings is determined, for all branches of the tree, by performing permutation tests, optionally with generalized Pareto p-value estimation.

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Version

Install

install.packages('TBEST')

Monthly Downloads

193

Version

5.0

License

GPL-2

Maintainer

Guoli Sun

Last Published

December 29th, 2014

Functions in TBEST (5.0)

best

An object of class "best"
T10

Breast tumor single cells data
partition

An object of class "partition"
PartitionTree

Find the most detailed partition of a tree into tight branches.
plot.best

Plot a dendrogam of a hierarchical cluster with branches labeled by their numbers and significance estimates of tightness.
LeafContent

Find names of leaves belongigng to given branches of a hierarchical tree
leukemia

Leukemia data
SigTree

Perform statistical analysis of tightness for branches of a hierarchical cluster.