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TBEST (version 5.2)

Tree Branches Evaluated Statistically for Tightness

Description

Our method introduces mathematically well-defined measures for tightness of branches in a hierarchical tree. Statistical significance of the findings is determined, for all branches of the tree, by performing permutation tests, optionally with generalized Pareto p-value estimation.

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Version

Install

install.packages('TBEST')

Monthly Downloads

156

Version

5.2

License

GPL-2

Maintainer

Guoli Sun

Last Published

May 24th, 2022

Functions in TBEST (5.2)

leukemia

Leukemia data
plot.best

Plot a dendrogam of a hierarchical cluster with branches labeled by their numbers and significance estimates of tightness.
PartitionTree

Find the most detailed partition of a tree into tight branches.
T10

Breast tumor single cells data
partition

An object of class "partition"
best

An object of class "best"
LeafContent

Find names of leaves belongigng to given branches of a hierarchical tree
SigTree

Perform statistical analysis of tightness for branches of a hierarchical cluster.