TBEST (version 5.2)

T10: Breast tumor single cells data

Description

This data set summarizes DNA copy number variation in 100 individual cancer cells harvested from a breast tumor. The cells belong to four subtypes, differing by ploidy.There are 47 Diploid+Pseudo-diploid, 24 Hypo-diploid, 4 Aneuploid B and 25 Aneuploid A cells. Their copy number profiles are summarized in terms of 354 amplification and deletion "cores", are computed by the CORE package.

Usage

data(T10)

Format

A data frame with 101 rows and 354 columns. Each column corresponds to a core. The first row is integer and contains the chromosome number for each core. The remaining rows are numeric, with values between 0 and 1, and each represents a DNA copy number profile of a cell.

Details

Please remove the first row before computing the distance matrix.

References

Alexander Krasnitz, Guoli Sun, Peter Andrews, and Michael Wigler(2013) Target inference from collections of genomic intervals

Examples

# NOT RUN {
data(T10)
dim(T10)
# }