TDCor (version 0.1-2)

TF: Table of 1834 Arabidopsis Transcription factors

Description

TF is a dataframe with two columns. The first column contains the AGI gene code of 1834 genes encoding Arabidopsis transcription factors. The second column contains the associated gene names.

Usage

data("TF")

Source

Data published on the Agris database website (http://arabidopsis.med.ohio-state.edu/AtTFDB/).

References

Davuluri et al. (2003), AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsis cis-regulatory elements and transcription factors, BMC Bioinformatics, 4:25

Examples

# Load the database
data(TF)

# Obtain the transcription factors for which data is available in the LR dataset
# i.e. present on ATH1 chip and differentially expressed.
data(LR_dataset)
clean.at(LR_dataset,TF[,1])