geneSets


    A data.frame with 1,454 lists of genes (specified by Affymetrix
    transcript cluster id's and gene symbols) to be included in the 
    correlation analysis. The data.frame contains a complete
    collection of all Gene Ontology gene sets included in the
    Molecular Signatures Database v3.1.


The TIN package implements a set of tools for
transcriptome instability analysis based on exon expression
profiles. Deviating exon usage is studied in the context of
splicing factors to analyse to what degree transcriptome
instability is correlated to splicing factor expression. In the
transcriptome instability correlation analysis, the data is
compared to both random permutations of alternative splicing
scores and expression of random gene sets.

Bjarne Johannessen

Transcriptome instability analysis

geneSets function

data.frame that contains 1,454 lists of genes, specified by
    Affymetrix transcript cluster id's and gene symbols.

Format

A data.frame with 1,454 lists of genes (specified by Affymetrix
    transcript cluster id's and gene symbols) to be included in the 
    correlation analysis. The data.frame contains a complete
    collection of all Gene Ontology gene sets included in the
    Molecular Signatures Database v3.1.

geneSets: geneSets

Description

Usage

Arguments

Value

Format