splicingFactors


    The gene set is a comprehensive collection of 280 genes involved
    in pre-mRNA splicing events (Sveen et al., Genome Medicine, 2011, 3:32).


The TIN package implements a set of tools for
transcriptome instability analysis based on exon expression
profiles. Deviating exon usage is studied in the context of
splicing factors to analyse to what degree transcriptome
instability is correlated to splicing factor expression. In the
transcriptome instability correlation analysis, the data is
compared to both random permutations of alternative splicing
scores and expression of random gene sets.

Bjarne Johannessen

Transcriptome instability analysis

splicingFactors function

data.frame with two columns; Affymetrix transcript cluster id
    and gene symbol.

Format

The gene set is a comprehensive collection of 280 genes involved
    in pre-mRNA splicing events (Sveen et al., Genome Medicine, 2011, 3:32).

splicingFactors: A list of 280 splicing factor genes

Description

Usage

Arguments

Value

Format