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TKF (version 0.0.8)

Pairwise Distance Estimation with TKF91 and TKF92 Model

Description

Pairwise evolutionary distance estimation between protein sequences with the TKF91 and TKF92 model, which consider all the possible paths of transforming from one sequence to another.

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Version

Install

install.packages('TKF')

Monthly Downloads

14

Version

0.0.8

License

GPL-2

Maintainer

Ge Tan

Last Published

April 18th, 2015

Functions in TKF (0.0.8)

TKF92

Evolutionary distance estimation with TKF92 model
AAToInt

AA, DNA, RNA character set
TKF91

Evolutionary distance estimation with TKF91 model
GONNET

The GONNET AA matrix
PAMn

PAM and Dayhoff matrices calculation
optim.phylo.wls

Phylogeny inference using the weighted least squares method
TKF92HG

Evolutionary distance estimation with TKF92 model considering the regional heterogeneity of substitution rates