TCGA_HT_8564_maf

<p>A data frame object containing the read counts data of somatic
single nucleotide variants (SNVs) loci for sample TCGA-HT-8564.
The header contains the chromosme that harbors the SNV ("chr" column),
the position of the SNV (defined by the "start" and "end" columns),
the informations about the reference and alternative base counts ("ref.count"
and	"alt.count" columns, respectively) and finally the sample ID ("sample"
column). For more information please visit
<a href="https://software.broadinstitute.org/software/igv/MutationAnnotationFormat">MAF file format</a>.</p>

A bioinformatics tool for the estimation of the tumor purity from sequencing data.
It uses the set of putative clonal somatic single nucleotide variants within copy number neutral
segments to call tumor cellularity.

Alessio Locallo

TPES

Tumor Purity Estimation using SNVs

TCGA_HT_8564_maf function

Format

<p>A data frame object containing the read counts data of somatic
single nucleotide variants (SNVs) loci for sample TCGA-HT-8564.
The header contains the chromosme that harbors the SNV ("chr" column),
the position of the SNV (defined by the "start" and "end" columns),
the informations about the reference and alternative base counts ("ref.count"
and	"alt.count" columns, respectively) and finally the sample ID ("sample"
column). For more information please visit
<a href='https://software.broadinstitute.org/software/igv/MutationAnnotationFormat'>MAF file format</a>.</p>

TCGA_HT_8564_maf: SNVsReadCountsFile for sample TCGA-HT-8564

Description

Arguments

Format