TPES v1.0.0

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Tumor Purity Estimation using SNVs

A bioinformatics tool for the estimation of the tumor purity from sequencing data. It uses the set of putative clonal somatic single nucleotide variants within copy number neutral segments to call tumor cellularity.

Functions in TPES

Name Description
TCGA_A8_A0A7_seg SEG file (segmented data) for sample TCGA-A8-A0A7
TCGA_HT_8564_seg SEG file (segmented data) for sample TCGA-HT-8564
TCGA_A8_A0A7_ploidy Ploidy data for sample TCGA-A8-A0A7
TPES_purity Tumor Purity Estimation using SNVs
TCGA_A8_A0A7_maf SNVsReadCountsFile for sample TCGA-A8-A0A7
TCGA_HT_8564_ploidy Ploidy data for sample TCGA-HT-8564
TCGA_HT_8564_maf SNVsReadCountsFile for sample TCGA-HT-8564
TPES_report Tumor Purity Estimation using SNVs
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Details

Type Package
Date 2019-01-09
License MIT + file LICENSE
Encoding UTF-8
LazyData true
RoxygenNote 6.1.1
NeedsCompilation no
Packaged 2019-01-09 17:03:16 UTC; l0ka
Repository CRAN
Date/Publication 2019-01-11 17:40:12 UTC

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