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TPES (version 1.0.0)

Tumor Purity Estimation using SNVs

Description

A bioinformatics tool for the estimation of the tumor purity from sequencing data. It uses the set of putative clonal somatic single nucleotide variants within copy number neutral segments to call tumor cellularity.

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Version

Install

install.packages('TPES')

Monthly Downloads

129

Version

1.0.0

License

MIT + file LICENSE

Maintainer

Alessio Locallo

Last Published

January 11th, 2019

Functions in TPES (1.0.0)

TCGA_A8_A0A7_seg

SEG file (segmented data) for sample TCGA-A8-A0A7
TCGA_HT_8564_seg

SEG file (segmented data) for sample TCGA-HT-8564
TCGA_A8_A0A7_ploidy

Ploidy data for sample TCGA-A8-A0A7
TPES_purity

Tumor Purity Estimation using SNVs
TCGA_A8_A0A7_maf

SNVsReadCountsFile for sample TCGA-A8-A0A7
TCGA_HT_8564_ploidy

Ploidy data for sample TCGA-HT-8564
TCGA_HT_8564_maf

SNVsReadCountsFile for sample TCGA-HT-8564
TPES_report

Tumor Purity Estimation using SNVs