myCounts: A pileup matrix example for use the TarSeqQC R package.
Description
The pileup matrix obtained using pileupCounts. It is built on the non-real
dataset containing amplicon sequencing results to test the TarSeqQC package.
Format
A data.frame objectDetails
- pos
- genomic positions of the explored features.
- seqnames
- chromosomes of the explored features.
- seq
- reference nucleotide corresponding to the genomic position.
- A,C,G,T,N
- number of nucleotide read.
- =
- Amount of read nucleotides matching the reference nucleotide.
- -
- Amount of read deletions.
- which_label
- feature location.
- counts
- Total read counts