TarSeqQC (version 1.2.0)

plotAttrExpl: Plot attribute exploration of a TargetExperiment object.

Description

plotAttrExpl plots density and box-plot of the analyzed attribute at a feature or gene level. This graphics could plot together using the ggplot2 geom_violin method.

Usage

plotAttrExpl(object, level = "feature", join = TRUE, log = TRUE, color = "blue")
"plotAttrExpl"(object, level = "feature", join = TRUE, log = TRUE, color = "blue")

Arguments

object

TargetExperiment class object.

level

Character 'feature' or 'gene' indicating at which level should be analyzed the attribute.

join

Logical indicating if boxplot and density function should be plotted together using the ggplot2 geom_violin method.

log

Logical indicating if the attribute should be considered in log10 scale.

color

A character indicating a valid name color.

Value

ggplot2 graphics.

See Also

plot, plotFeatPerform

Examples

if(interactive()){
## Loading the TargetExperiment object
data(ampliPanel, package="TarSeqQC")

# Attribute boxplot and density plot exploration
g<-plotAttrExpl(ampliPanel,level="feature",join=TRUE, log=FALSE, color="blue")
# x11(type="cairo")
g
}