TarSeqQC (version 1.2.0)

summaryFeatureLev: TargetExperiment summary.

Description

Explore the TargetExperiment's attribute values at feature and/or gene level.

Usage

summaryFeatureLev(object)
"summaryFeatureLev"(object)
summaryGeneLev(object)
"summaryGeneLev"(object)
"summary"(object, ...)
summaryIntervals(object, attributeThres = c(0, 1, 50, 200, 500, Inf), pool = FALSE)
"summaryIntervals"(object, attributeThres = c(0, 1, 50, 200, 500, Inf), pool = FALSE)

Arguments

object
TargetExperiment class object.
...
required by summary.
attributeThres
numeric indicating the intervals extreme values required by summaryIntervals.
pool
logical indicating if the summary should be performed for each pool separately

Value

according to the call one of the following objects can be returned
data.frame
statistics of the analyzed attribute
data.frame
Frequency table of the feature occurrence in the selected intervals

Examples

## Loading the TargetExperiment object
data(ampliPanel, package="TarSeqQC")

# Summary at feature level
summaryFeatureLev(ampliPanel)
# Summary at gene level
summaryGeneLev(ampliPanel)
# Defining the attribute interval extreme values
attributeThres<-c(0,1,50,200,500, Inf)
# Doing a frequency table for the attribute intervals
summaryIntervals(ampliPanel, attributeThres=attributeThres)