TarSeqQC (version 1.2.0)

summaryFeatureLev: TargetExperiment summary.

Description

Explore the TargetExperiment's attribute values at feature and/or gene level.

Usage

summaryFeatureLev(object)
"summaryFeatureLev"(object)
summaryGeneLev(object)
"summaryGeneLev"(object)
"summary"(object, ...)
summaryIntervals(object, attributeThres = c(0, 1, 50, 200, 500, Inf), pool = FALSE)
"summaryIntervals"(object, attributeThres = c(0, 1, 50, 200, 500, Inf), pool = FALSE)

Arguments

object

TargetExperiment class object.

...

required by summary.

attributeThres

numeric indicating the intervals extreme values required by summaryIntervals.

pool

logical indicating if the summary should be performed for each pool separately

Value

according to the call one of the following objects can be returned

data.frame

statistics of the analyzed attribute

data.frame

Frequency table of the feature occurrence in the selected intervals

Examples

## Loading the TargetExperiment object
data(ampliPanel, package="TarSeqQC")

# Summary at feature level
summaryFeatureLev(ampliPanel)
# Summary at gene level
summaryGeneLev(ampliPanel)
# Defining the attribute interval extreme values
attributeThres<-c(0,1,50,200,500, Inf)
# Doing a frequency table for the attribute intervals
summaryIntervals(ampliPanel, attributeThres=attributeThres)