Learn R Programming
⚠️There's a newer version (1.2.1) of this package.Take me there.

TimeMachine (version 1.0)

Time Machine

Description

Implements the Time Machine, a simulation approach for stochastic trees.

Copy Link

Version

Install

install.packages('TimeMachine')

Monthly Downloads

12

Version

1.0

License

GPL (>= 2)

Maintainer

Gianluca Campanella

Last Published

February 5th, 2013

Functions in TimeMachine (1.0)

pophistory

History of Population Size
mu.mle

Maximum-Likelihood Estimation of the Mutation Rate
time-dist

Time to Coalescent Event or Mutation
pdm

Example Dataset
stationary.dist

Compute Stationary Distribution of a Markov Chain
sample.pop

Sample Populations from the Wright-Fisher Model
tm

Log-likelihood Estimation using the Time Machine
full.transitions

Full Transition Matrix Computation