Function to coerce a graphNEL to a Pathway
Function to reduce the pathway graph
Function to use PWEA method on microarray or RNA-Seq data
Function to use DEGraph method on microarray or RNA-Seq data
Function to use TAPPA method on microarray or RNA-Seq data
Function to coerce an adjacency matrix to a Pathway
Function to prepare pathways for topology-based pathway analysis
Function to estimate multi-subunit protein complexes and gene families in a pathway
Deprecated functions in package ToPASeq
Creates auxiliary data needed for SPIA method
Function to calculate gene-level weights for topology-based pathway analysis
Function to use SPIA method on microarray or RNA-Seq data
Function to extract parts of object
convertIdentifiersByVector
Function to convert identifiers in pathways by user specified vector
Package for topology-based pathway analysis of microarray and RNASeq data
Function to parse KEGG KGML file into a Pathway
Class "Pathway"
Function to use TopologyGSA method on microarray or RNA-Seq data
Function to use clipper method on microarray or RNA-Seq data
Function to use PRS method on microarray or RNA-Seq data