SetMorphyWeights

A vector listing the new weights to be applied to each character

weight

A morphy object, perhaps created with <code><a rd-options="" href="/link/PhyDat2Morphy?package=TreeSearch&version=0.2.2" data-mini-rdoc="TreeSearch::PhyDat2Morphy">PhyDat2Morphy</a></code>.

morphyObj

Whether to sanity-check input data before applying. 
Defaults to TRUE to protect the user from crashes.

checkInput

Set the character weightings associated with a Morphy object

Searches for phylogenetic trees that are optimal using a user-defined criterion.
Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>.
Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith
(2019) <doi:10.1093/sysbio/syy083>.

Martin R. Smith

TreeSearch

Phylogenetic Tree Search Using Custom Optimality Criteria

Emmanuel Paradis

Klaus Schliep

Martin Brazeau

SetMorphyWeights function

A morphy object, perhaps created with <code><a rd-options='' href='PhyDat2Morphy'>PhyDat2Morphy</a></code>.

SetMorphyWeights: Set the character weightings associated with a Morphy object

Description

Usage

Arguments

Value