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UnifiedDoseFinding (version 0.1.10)

Dose-Finding Methods for Non-Binary Outcomes

Description

In many phase I trials, the design goal is to find the dose associated with a certain target toxicity rate. In some trials, the goal can be to find the dose with a certain weighted sum of rates of various toxicity grades. For others, the goal is to find the dose with a certain mean value of a continuous response. This package provides the setup and calculations needed to run a dose-finding trial with non-binary endpoints and performs simulations to assess design’s operating characteristics under various scenarios. Three dose finding designs are included in this package: unified phase I design (Ivanova et al. (2009) ), Quasi-CRM/Robust-Quasi-CRM (Yuan et al. (2007) , Pan et al. (2014) ) and generalized BOIN design (Mu et al. (2018) ). The toxicity endpoints can be handled with these functions including equivalent toxicity score (ETS), total toxicity burden (TTB), general continuous toxicity endpoints, with incorporating ordinal grade toxicity information into dose-finding procedure. These functions allow customization of design characteristics to vary sample size, cohort sizes, target dose-limiting toxicity (DLT) rates, discrete or continuous toxicity score, and incorporate safety and/or stopping rules.

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Version

Install

install.packages('UnifiedDoseFinding')

Monthly Downloads

286

Version

0.1.10

License

GPL-2

Maintainer

Chia-Wei Hsu

Last Published

October 15th, 2022

Functions in UnifiedDoseFinding (0.1.10)

get_oc_QuasiBOIN

Generate operating characteristics for finding the maximum tolerated dose (MTD) defined by Equivalent Score (ET) using Quasi-CRM design using gBOIN
next_Ivanova_continuous

Determine the dose for the next cohort of new patients using Inanova design
get_oc_Ivanova_binary

Generate operating characteristics for finding the maximum tolerated dose (MTD) of binary endpoint using design by Ivanova et al (2009)
next_RQ_CRM

Determine the dose for the next cohort of new patients using Quasi-CRM design
next_QuasiBOIN

Determine the dose for the next cohort of new patients based on equivalent score (ET)-defined target using gBOIN design
next_Ivanova_binary

Determine the dose for the next cohort of new patients of binary endpoint using design by Ivanova et al (2009)
get_oc_RQ_CRM

Generate operating characteristics for finding the maximum tolerated dose (MTD) defined by Equivalent Score (ET) using Quasi-CRM design
get_oc_Ivanova_continuous

Generate operating characteristics for finding the maximum tolerated dose (MTD) of continuous endpoint using design by Ivanova et al (2009)
get_oc_gBOIN_continuous

Generate operating characteristics for finding the maximum tolerated dose (MTD) using gBOIN design
get_oc_gBOIN_TB

Generate operating characteristics for finding the maximum tolerated dose (MTD) defined by Toxicity Burden (TB) Score using gBOIN design
next_gBOIN_continuous

Determine the dose for the next cohort of new patients for single-agent trials that aim to find a maximum tolerated dose (MTD) using gBOIN design
select_mtd_gBOIN_TB

Select the maximum tolerated dose (MTD) defined by Toxicity Burden (TB) Score for single agent trials using gBOIN design
next_gBOIN_TB

Determine the dose for the next cohort of new patients for single-agent trials that aim to find a maximum tolerated dose (MTD) defined by Toxicity Burden (TB) Score using gBOIN design
select_mtd_QuasiBOIN

Select the maximum tolerated dose (MTD)-defined by equivalent score (ET) using gBOIN design
select_mtd_gBOIN_continuous

Select the maximum tolerated dose (MTD) for single agent trials using gBOIN design
select_mtd_Ivanova_binary

Select the maximum tolerated dose (MTD) of binary endpoint for single agent trials using design by Ivanova et al (2009)
select_mtd_Ivanova_continuous

Select the maximum tolerated dose (MTD) for single agent trials of continuous endpoint using design by Ivanova et al (2009)
select_mtd_RQ_CRM

Select the maximum tolerated dose (MTD) using Quasi-CRM design