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UniprotR (version 2.1.0)

Retrieving Information of Proteins from Uniprot

Description

Connect to Uniprot to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication .

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Version

Install

install.packages('UniprotR')

Monthly Downloads

577

Version

2.1.0

License

GPL-3

Issues

0

Pull Requests

3

Stars

68

Forks

18

Maintainer

Mohamed Soudy

Last Published

September 23rd, 2021

Functions in UniprotR (2.1.0)

Get.diseases

Connect and parse UniProt information.
GETSeqFastaUniprot

Connect and parse UniProt information.
GetPathology_Biotech

Connect and parse UniProt Pathology_Biotech information.
GetGeneral_Information

Connect and parse UniProt General Information.
ConstructLocTree

Connect and parse UniProt information.
ConstructGenesTree

Connect and parse UniProt information.
GetExpression

Connect and parse UniProt Expression information.
GetProteinAnnontate

Connect and parse UniProt information.
GetSubcellular_location

Connect and parse UniProt protein Subcellular location information.
GetNamesTaxa

Connect and parse UniProt Names Taxa information.
GetPTM_Processing

Connect and parse UniProt PTM_Processsing information.
GetProteinInteractions

Connect and parse UniProt protein Interactions information.
GetProteomeFasta

Connect and DOWNLOAD Proteome info.
Goparse

Connect and parse UniProt information.
HandleBadRequests

Handle bad requests This Function is used to handle possible errors when trying to get url response.
GetTaxaidentifier

Connect and parse UniProt protein taxonomic information.
Plot.GOSubCellular

Connect and parse UniProt information.
PlotAcidity

Connect and parse UniProt information.
GetFamily_Domains

Connect and parse UniProt Family Domains information.
GetMiscellaneous

Connect and parse UniProt Miscellaneous information.
GetProteomeInfo

Connect and DOWNLOAD Proteome info.
GetProteinFunction

Connect and parse UniProt Protein Function information.
GetProteinGOInfo

Connect and parse UniProt proteins gene ontology information.
PlotEnrichedGO

Connect and parse UniProt information
PlotEnrichedPathways

Connect and parse UniProt information
GetproteinNetwork

Connect and parse stringdb information.
GetproteinNetwork_all

Connect and parse stringdb information.
GetPublication

Connect and parse UniProt Publication about a protein information.
ProcessAcc

Connect and parse UniProt information.
Enrichment.MF

Connect and parse UniProt information
Enrichment.REAC

Connect and parse UniProt information
PlotGoterms

Connect and parse UniProt information.
PlotGravy

Connect and parse UniProt information.
ConvertID

Connect and parse UniProt database identifiers information.
Enrichment.BP

Connect and parse UniProt information
GetSeqLength

Connect and parse UniProt Sequences information.
GetSequenceIso

Connect and parse UniProt Sequences information.
PlotGenesNetwork

Connect and parse UniProt information.
GetTaxonomic_lineage

Connect and parse UniProt Taxonomic_lineage information.
GetCross_references_Information

Connect and parse UniProt Cross-references information.
GetAccessionList

Connect and parse UniProt information.
PlotProteinGO_molc

Connect and parse UniProt information.
PlotProteinGO_cel

Connect and parse UniProt information.
PlotproteinExist

Connect and parse UniProt information.
PlotProteinTaxa

Connect and parse UniProt information.
PlotGoInfo

Connect and parse UniProt information.
GetSequences

Connect and parse UniProt Sequences information.
GetStructureInfo

Connect and parse UniProt protein Structure information.
GetpdbStructure

Connect and parse UniProt information.
PlotGOBiological

Connect and parse UniProt information.
PlotGOAll

Connect and parse UniProt information.
Pathway.Enr

Connect and parse UniProt information
PlotCharge

Connect and parse UniProt information.
Plot.GOMolecular

Connect and parse UniProt information.
PlotChromosomeInfo

Connect and parse UniProt information.
PlotproteinScore

Connect and parse UniProt information.
PlotProteinGO_bio

Connect and parse UniProt information.
PlotPhysicochemical

Connect and parse UniProt information.
PlotproteinStatus

Connect and parse UniProt information.
Enrichment.CC

Connect and parse UniProt information
Enrichment.KEGG

Connect and parse UniProt information