ConvertID

The function is work to convert the UniProtKB AC/ID to any database identifiers
available by the UniProtKB.
For more information about available database identifiers
see https://www.uniprot.org/help/id_mapping.
see https://raw.githubusercontent.com/MohmedSoudy/UniprotR/master/uniprot_ids.csv

Connect to Uniprot <https://www.uniprot.org/> to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication <https://www.sciencedirect.com/science/article/pii/S1874391919303859>.

Mohamed Soudy

UniprotR

Retrieving Information of Proteins from Uniprot

Ali Mostafa

ConvertID function

<dl><dt>ProteinAccList</dt>
<dd>Vector of UniProt Accession/s</dd>
<dt>ID_from</dt>
<dd>string of database identifier abbreviation, from which the Accession/ID will be converted</dd>
<dt>ID_to</dt>
<dd>string of database identifier abbreviation, to which the Accession/ID will be converted.
default is all database identifier available in UniProtKB</dd>
<dt>taxId</dt>
<dd>string Needed when the ID_to is 'UniProtKB' that could be '9606' for human.</dd>
<dt>path</dt>
<dd>path to save excel file containig results returened by the function.</dd></dl>

Arguments

Mohmed Soudy <a href="/link/Mohamed.soudy%4057357.com?package=UniprotR&version=2.4.0" data-mini-rdoc="UniprotR::Mohamed.soudy@57357.com">Mohamed.soudy@57357.com</a> and Ali Mostafa <a href="/link/ali.mo.anwar%40std.agr.cu.edu.eg?package=UniprotR&version=2.4.0" data-mini-rdoc="UniprotR::ali.mo.anwar@std.agr.cu.edu.eg">ali.mo.anwar@std.agr.cu.edu.eg</a>

Author

Connect and parse UniProt database identifiers information. — ConvertID

<dl>

<dt>ProteinAccList</dt>
<dd>Vector of UniProt Accession/s</dd>


<dt>ID_from</dt>
<dd>string of database identifier abbreviation, from which the Accession/ID will be converted</dd>


<dt>ID_to</dt>
<dd>string of database identifier abbreviation, to which the Accession/ID will be converted.
default is all database identifier available in UniProtKB</dd>


<dt>taxId</dt>
<dd>string Needed when the ID_to is 'UniProtKB' that could be '9606' for human.</dd>


<dt>path</dt>
<dd>path to save excel file containig results returened by the function.</dd>

</dl>

Mohmed Soudy <a href='mailto:Mohamed.soudy@57357.com'>Mohamed.soudy@57357.com</a> and Ali Mostafa <a href='mailto:ali.mo.anwar@std.agr.cu.edu.eg'>ali.mo.anwar@std.agr.cu.edu.eg</a>

ConvertID: Connect and parse UniProt database identifiers information.

Description

Usage

Value

Arguments

Author