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UniprotR (version 2.4.0)

Retrieving Information of Proteins from Uniprot

Description

Connect to Uniprot to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication .

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Version

Install

install.packages('UniprotR')

Monthly Downloads

12,996

Version

2.4.0

License

GPL-3

Issues

2

Pull Requests

3

Stars

67

Forks

18

Maintainer

Mohamed Soudy

Last Published

March 5th, 2024

Functions in UniprotR (2.4.0)

GetProteinGOInfo

Connect and parse UniProt proteins gene ontology information.
GetStructureInfo

Connect and parse UniProt protein Structure information.
GetProteinFunction

Connect and parse UniProt Protein Function information.
GetProteinInteractions

Connect and parse UniProt protein Interactions information.
HandleBadRequests

Handle bad requests This Function is used to handle possible errors when trying to get url response.
GetproteinNetwork_all

Connect and parse stringdb information.
Pathway.Enr

Connect and parse UniProt information
PlotGenesNetwork

Connect and parse UniProt information.
PlotGOBiological

Connect and parse UniProt information.
PlotChromosomeInfo

Connect and parse UniProt information.
GetNamesTaxa

Connect and parse UniProt Names Taxa information.
GetSequenceIso

Connect and parse UniProt Sequences information.
GetSequences

Connect and parse UniProt Sequences information.
Goparse

Connect and parse UniProt information.
PlotGOAll

Connect and parse UniProt information.
GetpdbStructure

Connect and parse UniProt information.
PlotGravy

Connect and parse UniProt information.
GetProteomeFasta

Connect and DOWNLOAD Proteome info.
GetSubcellular_location

Connect and parse UniProt protein Subcellular location information.
GetproteinNetwork

Connect and parse stringdb information.
PlotPhysicochemical

Connect and parse UniProt information.
GetProteomeInfo

Connect and DOWNLOAD Proteome info.
PlotProteinGO_bio

Connect and parse UniProt information.
GetPublication

Connect and parse UniProt Publication about a protein information.
PlotProteinGO_cel

Connect and parse UniProt information.
PlotProteinTaxa

Connect and parse UniProt information.
PlotProteinGO_molc

Connect and parse UniProt information.
PlotGoInfo

Connect and parse UniProt information.
Plot.GOMolecular

Connect and parse UniProt information.
Plot.GOSubCellular

Connect and parse UniProt information.
PlotGoterms

Connect and parse UniProt information.
ProcessAcc

Connect and parse UniProt information.
PlotAcidity

Connect and parse UniProt information.
GetSeqLength

Connect and parse UniProt Sequences information.
PlotCharge

Connect and parse UniProt information.
PlotproteinStatus

Connect and parse UniProt information.
PlotproteinExist

Connect and parse UniProt information.
GETSeqFastaUniprot

Connect and parse UniProt information.
GetProteinAnnontate

Connect and parse UniProt information.
Get.diseases

Connect and parse UniProt information.
ConvertID

Connect and parse UniProt database identifiers information.
Enrichment.CC

Connect and parse UniProt information
ConstructGenesTree

Connect and parse UniProt information.
ConstructLocTree

Connect and parse UniProt information.
GetMiscellaneous

Connect and parse UniProt Miscellaneous information.
Enrichment.KEGG

Connect and parse UniProt information
Enrichment.MF

Connect and parse UniProt information
GetFamily_Domains

Connect and parse UniProt Family Domains information.
GetGeneral_Information

Connect and parse UniProt General Information.
GetPathology_Biotech

Connect and parse UniProt Pathology_Biotech information.
GetPTM_Processing

Connect and parse UniProt PTM_Processsing information.
Enrichment.REAC

Connect and parse UniProt information
GetAccessionList

Connect and parse UniProt information.
Enrichment.BP

Connect and parse UniProt information
GetExpression

Connect and parse UniProt Expression information.