GetproteinNetwork_all

This function is connecting to stringdb and retrieve PPI between input list

Connect to Uniprot <https://www.uniprot.org/> to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication <https://www.sciencedirect.com/science/article/pii/S1874391919303859>.

Mohamed Soudy

UniprotR

Retrieving Information of Proteins from Uniprot

Ali Mostafa

GetproteinNetwork_all function

<dl><dt>ProteinAccList</dt>
<dd>input a vector of UniProt Accession/s</dd>
<dt>directorypath</dt>
<dd>path to save excel file containig results returened by the function.</dd>
<dt>SpeciesID</dt>
<dd>Taxonomic id of accession's species ex. homo sapines 9606</dd></dl>

Arguments

Mohmed Soudy <a href="/link/Mohamed.soudy%4057357.com?package=UniprotR&version=2.4.0" data-mini-rdoc="UniprotR::Mohamed.soudy@57357.com">Mohamed.soudy@57357.com</a> and Ali Mostafa <a href="/link/ali.mo.anwar%40std.agr.cu.edu.eg?package=UniprotR&version=2.4.0" data-mini-rdoc="UniprotR::ali.mo.anwar@std.agr.cu.edu.eg">ali.mo.anwar@std.agr.cu.edu.eg</a>

Author

Connect and parse stringdb information. — GetproteinNetwork_all

<dl>

<dt>ProteinAccList</dt>
<dd>input a vector of UniProt Accession/s</dd>


<dt>directorypath</dt>
<dd>path to save excel file containig results returened by the function.</dd>


<dt>SpeciesID</dt>
<dd>Taxonomic id of accession's species ex. homo sapines 9606</dd>

</dl>

Mohmed Soudy <a href='mailto:Mohamed.soudy@57357.com'>Mohamed.soudy@57357.com</a> and Ali Mostafa <a href='mailto:ali.mo.anwar@std.agr.cu.edu.eg'>ali.mo.anwar@std.agr.cu.edu.eg</a>

GetproteinNetwork_all: Connect and parse stringdb information.

Description

Usage

Arguments

Author