Pathway.Enr

This function is used for Enrichment analysis of given list of genes or proteins

Connect to Uniprot <https://www.uniprot.org/> to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication <https://www.sciencedirect.com/science/article/pii/S1874391919303859>.

Mohamed Soudy

UniprotR

Retrieving Information of Proteins from Uniprot

Ali Mostafa

Pathway.Enr function

<dl><dt>Accs</dt>
<dd>Vector of UniProt Accession/s or genes</dd>
<dt>OS</dt>
<dd>organism Example: human - 'hsapiens' for more info https://biit.cs.ut.ee/gprofiler/page/organism-list</dd>
<dt>p_value</dt>
<dd>custom p-value threshold for significance, default = 0.05</dd>
<dt>directorypath</dt>
<dd>Path to save output plot</dd>
<dt>top</dt>
<dd>Top N terms to be visualized</dd></dl>

Arguments

Mohmed Soudy <a href="/link/Mohamed.soudy%4057357.com?package=UniprotR&version=2.4.0" data-mini-rdoc="UniprotR::Mohamed.soudy@57357.com">Mohamed.soudy@57357.com</a> and Ali Mostafa <a href="/link/ali.mo.anwar%40std.agr.cu.edu.eg?package=UniprotR&version=2.4.0" data-mini-rdoc="UniprotR::ali.mo.anwar@std.agr.cu.edu.eg">ali.mo.anwar@std.agr.cu.edu.eg</a>

Author

Connect and parse UniProt information — Pathway.Enr

<dl>

<dt>Accs</dt>
<dd>Vector of UniProt Accession/s or genes</dd>


<dt>OS</dt>
<dd>organism Example: human - 'hsapiens' for more info https://biit.cs.ut.ee/gprofiler/page/organism-list</dd>


<dt>p_value</dt>
<dd>custom p-value threshold for significance, default = 0.05</dd>


<dt>directorypath</dt>
<dd>Path to save output plot</dd>


<dt>top</dt>
<dd>Top N terms to be visualized</dd>

</dl>

Mohmed Soudy <a href='mailto:Mohamed.soudy@57357.com'>Mohamed.soudy@57357.com</a> and Ali Mostafa <a href='mailto:ali.mo.anwar@std.agr.cu.edu.eg'>ali.mo.anwar@std.agr.cu.edu.eg</a>

Pathway.Enr: Connect and parse UniProt information

Description

Usage

Arguments

Author