Arguments
datExpr
data frame containing expression data. Columns correspond to genes and rows to
samples.
selectCols
can be used to select genes whose adjacencies will be calculated. Should be either a
numeric vector giving the indices of the genes to be used, or a boolean vector indicating which genes are
to be used.
power
soft thresholding power.
type
network type. Allowed values are (unique abbreviations of) "unsigned",
"signed", "signed hybrid".
corFnc
character string specifying the function to be used to calculate co-expression
similarity. Defaults to Pearson correlation. Any function returning values between -1 and 1 can be used.
corOptions
character string specifying additional arguments to be passed to the function given
by corFnc. Use "use = 'p', method = 'Spearman'" to obtain Spearman correlation.