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ZIM4rv

Overview

ZIM4rv is a package for precisely modeling zero‐inflated count phenotype for rare variants. This package primarily implements the genetic association test between zero‐inflated count phenotype and rare variants.

Installation

You can install the development version of ZIM4rv from Github with:

# install.packages("devtools")
devtools::install_github("fanx0037/ZIM4rv")

You can also get the official release version from CRAN

install.packages("ZIM4rv")

Usage

The following help page will provide quick references for ZIM4rv package and its main functions:

library(ZIM4rv)
?zimfrv

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Version

Install

install.packages('ZIM4rv')

Monthly Downloads

169

Version

0.1.1

License

GPL-3

Issues

Pull Requests

Stars

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Maintainer

Xiaomin Liu

Last Published

December 19th, 2024

Functions in ZIM4rv (0.1.1)

preprocess_genedata

preprocess_genedata
preprocess_phenodata

preprocess_phenodata
phi_lambda_hat

phi_lambda_hat
phi_mu_hat4zinb

phi_mu_hat4zinb
Ex1_phenodata

An example dataset of phenodata
U_fi_lmd

U_fi_lmd
p_kernel_single

p_kernel_single
U_phi_mu4zinb

U_phi_mu4zinb
cauchyp

cauchyp
vuong_test

vuong_test
p_burden_single

p_burden_single
zimfrv

zimfrv
Ex2_pheno

An example dataset of pheno file
Ex2_dosage

An example dataset of dosage file
Ex2_fam

An example dataset of .fam file
Ex2_covar

An example dataset of covariate file
Ex1_genedata

An example dataset of genedata
Ex2_region

An example dataset of genetic region file